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There are some questions that are in need of answers here. There could be many roots to this issue or just one. Find the source is the solution.

How long has your system been running?

What are your water perams at, in detail?

How much water circulation do you have?

What does your bioload consist of?

How much and how often do you feed?

What type of Lights are you useing?
 

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with out any info, I would guess your tank is new (less than a month) and it's just cycling. if that's the case don't worry about it, it will clear up when the good bacteria matures.
 
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